Which protein assay is compatible with lysates obtained with HCl treatment?

This question is actually better suited for a company supplying the protein assay you wish to use. Thermo, for example, has a few different BCA assays on their website where they lay out which reagents are compatible with each kit. We recommend that you contact directly the manufacturer or vendor of the protein assay you wish to use. They can provide you answers to your questions regarding the specific protein assay you would like to use.

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